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high sensitivity (hs) dna chip  (Agilent technologies)


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    Structured Review

    Agilent technologies high sensitivity (hs) dna chip
    High Sensitivity (Hs) Dna Chip, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/high+sensitivity+(hs)+dna+chip/pmc10822167-258-11-8
    Average 90 stars, based on 1 article reviews
    high sensitivity (hs) dna chip - by Bioz Stars, 2026-10
    90/100 stars

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    Related Articles

    Membrane:

    Article Title: Mapping phenotypic performance and novel SNPs for cold tolerance in tomato ( Solanum lycopersicum ) genotypes through GWAS and population genetics
    Article Snippet: The library pool was analyzed in Bioanalyzer 2100 (Agilent Technologies) using High Sensitivity (HS) DNA chip and then sequenced independently on Illumina platform to generate up to ~ 3 million reads/ sample.

    Article Title: The circadian clock CRY1 regulates pluripotent stem cell identity and somatic cell reprogramming.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Trichostatin A Sigma-Aldrich Cat# T8552 Protein Assay Dye Reagent Bio-Rad Laboratories Cat# 500-0006 Nitrocellulose Membrane, 0.45 um Bio-Rad Laboratories Cat# 1620115 Immobilon Western Chemiluminescent HRP substrate EMD Millipore Cat# WBKLS0500 TRIzol Invitrogen Cat# 15596026 Maxima H Minus Mastermix Thermo Scientific Cat# M1662 PowerUp SYBR Master Mix Applied Biosystems Cat# A25918 Protein G Sepharose Fast Flow Sigma-Aldrich Cat# P3296 Protein A Sepharose Fast Flow Sigma-Aldrich Cat# P9424 RNase A Sigma-Aldrich Cat# R6513 Proteinase A Sigma-Aldrich Cat# P8892 Oligomycin Sigma-Aldrich Cat# O4876 carbonyl cyanideptrifluoromethoxyphenylhydrazone (FCCP) Sigma-Aldrich Cat# C2920 rotenone Sigma-Aldrich Cat# R8875 SytoxBlue Invitrogen Cat# S34857 Critical Commercial Assays NEXTFLEX Rapid DNA-seq v2.0 Perkin Elmer Cat# NOVA-5188-03 24-well Seahorse XF-24 Assay Kit Agilent Cat# 100867-100 Chromium Next GEM Single Cell 30 GEM, Library & Gel Bead Kit v3.1, 16 rxns 10x Genomics Cat# 1000121 Chromium Next GEM Chip G Single Cell Kit, 48 rxns 10x Genomics Cat# 1000120 Qubit dsDNA HS Assay Kit Life Technologies Cat#: Q32851 high-sensitivity DNA chips Agilent Cat#: 50674626 KAPA Library Quantification Kit Kapa Biosystems Cat#: KK4824 Deposited Data CRY1 ChIP-seq data This paper GSE230321 scRNA-seq data This paper GSE230371 Experimental Models: Organisms/Strains Cry1/2 double knockout mice Vitaterna et al.120 N/A Immortalized MEFs Aguilar-Arnal et al.68 N/A Nanog-GFP primary MEFs Kamon et al.121 N/A Nanog-GFP PreiPSCs This paper N/A Nanog-GFP iPSCs This paper N/A ZHBTc4ESCs Niwa et al.122 N/A Cry1 KO ESCs This paper N/A PLAT-E Cell Biolabs Cat# RV-101 293 expressing LIF cells Hishida et al.123 N/A HEK293 cells Cardone et al.124 N/A Recombinant DNA Myc-Bmal1 Cardone et al.124 N/A Myc-Clock Cardone et al.124 N/A pMXs-Oct3/4 Takahashi et al.125 Addgene # 13366 pMXs-Sox2 Takahashi et al.125 Addgene # 13367 pMXs-Klf4 Takahashi et al.125 Addgene # 13370 (Continued on next page) Cell Reports 42, 112590, June 27, 2023 21

    Article Title: Metagenomic profiling for gut of indigenous poultry reared under free range system of management reveal prevalence of zoonotic pathogens in chicken, while predominating beneficial microbes in duck
    Article Snippet: Quantity and quality check (QC) of library on Bio-analyzer: The ampli ed libraries were analyzed in Bioanalyzer 2100 (Agilent Technologies) using High Sensitivity (HS) DNA chip (Pal, A.

    Article Title: Whole-Genome Sequence Insight into the Plant-Growth-Promoting Bacterium Priestia filamentosa Strain AZC66 Obtained from Zygophyllum coccineum Rhizosphere
    Article Snippet: According to the manufacturer’s instructions, the amplified library was analyzed on a Bioanalyzer 2100 (Agilent Technologies) using a High Sensitivity (HS) DNA chip.

    Article Title: CRISPR-Cas9 Editing Induces Loss of Heterozygosity in the Pathogenic Yeast Candida parapsilosis
    Article Snippet: Quality control of amplified libraries was performed using Bioanalyzer DNA high-sensitivity (HS) chip (Agilent Technologies).

    Article Title: Circulating cell-free DNA for target quantification in hematologic malignancies: Validation of a protocol to overcome pre-analytical biases.
    Article Snippet: Roberta Soscia | Irene Della Starza | Lucia Anna De Novi | Caterina Ilari | Michela Ansuinelli | Marzia Cavalli | Vittorio Bellomarino | Luciana Cafforio | Mariangela Di Trani | Giovanni Cazzaniga | Grazia Fazio | Alessandra Santoro | Domenico Salemi | Orietta Spinelli | Manuela Tosi | Carolina Terragna | Valentina Robustelli | Teresa Bellissimo | Gioia Colafigli | Massimo Breccia | Sabina Chiaretti | Alice Di Rocco | Maurizio Martelli | Anna Guarini | Ilaria Del Giudice | Robin Foà

    Article Title: Uncovering Alternate Splicing Events and Premature Stop Codons Associated with Early Sucrose Accumulation in Sugarcane Using BSR-seq
    Article Snippet: Identification of the source of genetic variation in the large and complex genome of sugarcane has been comparatively less explored through next-generation sequencing tools.. In this study, RNA-seq libraries of two extreme bulks from a segregating full-sib population and its parents were used to identify highly significant, alternate splicing (AS) events and premature stop codons (PMC) associated with early sucrose accumulation.. An important differential AS event was identified within the β-subunit of pyrophosphate-fructose 6-phosphate 1-phosphotransferase (PFP) which plays a key role in carbon partitioning in sugarcane.

    Western Blot:

    Article Title: Mapping phenotypic performance and novel SNPs for cold tolerance in tomato ( Solanum lycopersicum ) genotypes through GWAS and population genetics
    Article Snippet: The library pool was analyzed in Bioanalyzer 2100 (Agilent Technologies) using High Sensitivity (HS) DNA chip and then sequenced independently on Illumina platform to generate up to ~ 3 million reads/ sample.

    Article Title: The circadian clock CRY1 regulates pluripotent stem cell identity and somatic cell reprogramming.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Trichostatin A Sigma-Aldrich Cat# T8552 Protein Assay Dye Reagent Bio-Rad Laboratories Cat# 500-0006 Nitrocellulose Membrane, 0.45 um Bio-Rad Laboratories Cat# 1620115 Immobilon Western Chemiluminescent HRP substrate EMD Millipore Cat# WBKLS0500 TRIzol Invitrogen Cat# 15596026 Maxima H Minus Mastermix Thermo Scientific Cat# M1662 PowerUp SYBR Master Mix Applied Biosystems Cat# A25918 Protein G Sepharose Fast Flow Sigma-Aldrich Cat# P3296 Protein A Sepharose Fast Flow Sigma-Aldrich Cat# P9424 RNase A Sigma-Aldrich Cat# R6513 Proteinase A Sigma-Aldrich Cat# P8892 Oligomycin Sigma-Aldrich Cat# O4876 carbonyl cyanideptrifluoromethoxyphenylhydrazone (FCCP) Sigma-Aldrich Cat# C2920 rotenone Sigma-Aldrich Cat# R8875 SytoxBlue Invitrogen Cat# S34857 Critical Commercial Assays NEXTFLEX Rapid DNA-seq v2.0 Perkin Elmer Cat# NOVA-5188-03 24-well Seahorse XF-24 Assay Kit Agilent Cat# 100867-100 Chromium Next GEM Single Cell 30 GEM, Library & Gel Bead Kit v3.1, 16 rxns 10x Genomics Cat# 1000121 Chromium Next GEM Chip G Single Cell Kit, 48 rxns 10x Genomics Cat# 1000120 Qubit dsDNA HS Assay Kit Life Technologies Cat#: Q32851 high-sensitivity DNA chips Agilent Cat#: 50674626 KAPA Library Quantification Kit Kapa Biosystems Cat#: KK4824 Deposited Data CRY1 ChIP-seq data This paper GSE230321 scRNA-seq data This paper GSE230371 Experimental Models: Organisms/Strains Cry1/2 double knockout mice Vitaterna et al.120 N/A Immortalized MEFs Aguilar-Arnal et al.68 N/A Nanog-GFP primary MEFs Kamon et al.121 N/A Nanog-GFP PreiPSCs This paper N/A Nanog-GFP iPSCs This paper N/A ZHBTc4ESCs Niwa et al.122 N/A Cry1 KO ESCs This paper N/A PLAT-E Cell Biolabs Cat# RV-101 293 expressing LIF cells Hishida et al.123 N/A HEK293 cells Cardone et al.124 N/A Recombinant DNA Myc-Bmal1 Cardone et al.124 N/A Myc-Clock Cardone et al.124 N/A pMXs-Oct3/4 Takahashi et al.125 Addgene # 13366 pMXs-Sox2 Takahashi et al.125 Addgene # 13367 pMXs-Klf4 Takahashi et al.125 Addgene # 13370 (Continued on next page) Cell Reports 42, 112590, June 27, 2023 21

    Article Title: Metagenomic profiling for gut of indigenous poultry reared under free range system of management reveal prevalence of zoonotic pathogens in chicken, while predominating beneficial microbes in duck
    Article Snippet: Quantity and quality check (QC) of library on Bio-analyzer: The ampli ed libraries were analyzed in Bioanalyzer 2100 (Agilent Technologies) using High Sensitivity (HS) DNA chip (Pal, A.

    Article Title: Whole-Genome Sequence Insight into the Plant-Growth-Promoting Bacterium Priestia filamentosa Strain AZC66 Obtained from Zygophyllum coccineum Rhizosphere
    Article Snippet: According to the manufacturer’s instructions, the amplified library was analyzed on a Bioanalyzer 2100 (Agilent Technologies) using a High Sensitivity (HS) DNA chip.

    Article Title: CRISPR-Cas9 Editing Induces Loss of Heterozygosity in the Pathogenic Yeast Candida parapsilosis
    Article Snippet: Quality control of amplified libraries was performed using Bioanalyzer DNA high-sensitivity (HS) chip (Agilent Technologies).

    Article Title: Circulating cell-free DNA for target quantification in hematologic malignancies: Validation of a protocol to overcome pre-analytical biases.
    Article Snippet: Roberta Soscia | Irene Della Starza | Lucia Anna De Novi | Caterina Ilari | Michela Ansuinelli | Marzia Cavalli | Vittorio Bellomarino | Luciana Cafforio | Mariangela Di Trani | Giovanni Cazzaniga | Grazia Fazio | Alessandra Santoro | Domenico Salemi | Orietta Spinelli | Manuela Tosi | Carolina Terragna | Valentina Robustelli | Teresa Bellissimo | Gioia Colafigli | Massimo Breccia | Sabina Chiaretti | Alice Di Rocco | Maurizio Martelli | Anna Guarini | Ilaria Del Giudice | Robin Foà

    Article Title: Uncovering Alternate Splicing Events and Premature Stop Codons Associated with Early Sucrose Accumulation in Sugarcane Using BSR-seq
    Article Snippet: Identification of the source of genetic variation in the large and complex genome of sugarcane has been comparatively less explored through next-generation sequencing tools.. In this study, RNA-seq libraries of two extreme bulks from a segregating full-sib population and its parents were used to identify highly significant, alternate splicing (AS) events and premature stop codons (PMC) associated with early sucrose accumulation.. An important differential AS event was identified within the β-subunit of pyrophosphate-fructose 6-phosphate 1-phosphotransferase (PFP) which plays a key role in carbon partitioning in sugarcane.

    Chromatin Immunoprecipitation:

    Article Title: Mapping phenotypic performance and novel SNPs for cold tolerance in tomato ( Solanum lycopersicum ) genotypes through GWAS and population genetics
    Article Snippet: The library pool was analyzed in Bioanalyzer 2100 (Agilent Technologies) using High Sensitivity (HS) DNA chip and then sequenced independently on Illumina platform to generate up to ~ 3 million reads/ sample.

    Article Title: The circadian clock CRY1 regulates pluripotent stem cell identity and somatic cell reprogramming.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Trichostatin A Sigma-Aldrich Cat# T8552 Protein Assay Dye Reagent Bio-Rad Laboratories Cat# 500-0006 Nitrocellulose Membrane, 0.45 um Bio-Rad Laboratories Cat# 1620115 Immobilon Western Chemiluminescent HRP substrate EMD Millipore Cat# WBKLS0500 TRIzol Invitrogen Cat# 15596026 Maxima H Minus Mastermix Thermo Scientific Cat# M1662 PowerUp SYBR Master Mix Applied Biosystems Cat# A25918 Protein G Sepharose Fast Flow Sigma-Aldrich Cat# P3296 Protein A Sepharose Fast Flow Sigma-Aldrich Cat# P9424 RNase A Sigma-Aldrich Cat# R6513 Proteinase A Sigma-Aldrich Cat# P8892 Oligomycin Sigma-Aldrich Cat# O4876 carbonyl cyanideptrifluoromethoxyphenylhydrazone (FCCP) Sigma-Aldrich Cat# C2920 rotenone Sigma-Aldrich Cat# R8875 SytoxBlue Invitrogen Cat# S34857 Critical Commercial Assays NEXTFLEX Rapid DNA-seq v2.0 Perkin Elmer Cat# NOVA-5188-03 24-well Seahorse XF-24 Assay Kit Agilent Cat# 100867-100 Chromium Next GEM Single Cell 30 GEM, Library & Gel Bead Kit v3.1, 16 rxns 10x Genomics Cat# 1000121 Chromium Next GEM Chip G Single Cell Kit, 48 rxns 10x Genomics Cat# 1000120 Qubit dsDNA HS Assay Kit Life Technologies Cat#: Q32851 high-sensitivity DNA chips Agilent Cat#: 50674626 KAPA Library Quantification Kit Kapa Biosystems Cat#: KK4824 Deposited Data CRY1 ChIP-seq data This paper GSE230321 scRNA-seq data This paper GSE230371 Experimental Models: Organisms/Strains Cry1/2 double knockout mice Vitaterna et al.120 N/A Immortalized MEFs Aguilar-Arnal et al.68 N/A Nanog-GFP primary MEFs Kamon et al.121 N/A Nanog-GFP PreiPSCs This paper N/A Nanog-GFP iPSCs This paper N/A ZHBTc4ESCs Niwa et al.122 N/A Cry1 KO ESCs This paper N/A PLAT-E Cell Biolabs Cat# RV-101 293 expressing LIF cells Hishida et al.123 N/A HEK293 cells Cardone et al.124 N/A Recombinant DNA Myc-Bmal1 Cardone et al.124 N/A Myc-Clock Cardone et al.124 N/A pMXs-Oct3/4 Takahashi et al.125 Addgene # 13366 pMXs-Sox2 Takahashi et al.125 Addgene # 13367 pMXs-Klf4 Takahashi et al.125 Addgene # 13370 (Continued on next page) Cell Reports 42, 112590, June 27, 2023 21

    Article Title: Metagenomic profiling for gut of indigenous poultry reared under free range system of management reveal prevalence of zoonotic pathogens in chicken, while predominating beneficial microbes in duck
    Article Snippet: Quantity and quality check (QC) of library on Bio-analyzer: The ampli ed libraries were analyzed in Bioanalyzer 2100 (Agilent Technologies) using High Sensitivity (HS) DNA chip (Pal, A.

    Article Title: Whole-Genome Sequence Insight into the Plant-Growth-Promoting Bacterium Priestia filamentosa Strain AZC66 Obtained from Zygophyllum coccineum Rhizosphere
    Article Snippet: According to the manufacturer’s instructions, the amplified library was analyzed on a Bioanalyzer 2100 (Agilent Technologies) using a High Sensitivity (HS) DNA chip.

    Article Title: CRISPR-Cas9 Editing Induces Loss of Heterozygosity in the Pathogenic Yeast Candida parapsilosis
    Article Snippet: Quality control of amplified libraries was performed using Bioanalyzer DNA high-sensitivity (HS) chip (Agilent Technologies).

    Article Title: Circulating cell-free DNA for target quantification in hematologic malignancies: Validation of a protocol to overcome pre-analytical biases.
    Article Snippet: Roberta Soscia | Irene Della Starza | Lucia Anna De Novi | Caterina Ilari | Michela Ansuinelli | Marzia Cavalli | Vittorio Bellomarino | Luciana Cafforio | Mariangela Di Trani | Giovanni Cazzaniga | Grazia Fazio | Alessandra Santoro | Domenico Salemi | Orietta Spinelli | Manuela Tosi | Carolina Terragna | Valentina Robustelli | Teresa Bellissimo | Gioia Colafigli | Massimo Breccia | Sabina Chiaretti | Alice Di Rocco | Maurizio Martelli | Anna Guarini | Ilaria Del Giudice | Robin Foà

    Article Title: Uncovering Alternate Splicing Events and Premature Stop Codons Associated with Early Sucrose Accumulation in Sugarcane Using BSR-seq
    Article Snippet: Identification of the source of genetic variation in the large and complex genome of sugarcane has been comparatively less explored through next-generation sequencing tools.. In this study, RNA-seq libraries of two extreme bulks from a segregating full-sib population and its parents were used to identify highly significant, alternate splicing (AS) events and premature stop codons (PMC) associated with early sucrose accumulation.. An important differential AS event was identified within the β-subunit of pyrophosphate-fructose 6-phosphate 1-phosphotransferase (PFP) which plays a key role in carbon partitioning in sugarcane.

    Double Knockout:

    Article Title: Mapping phenotypic performance and novel SNPs for cold tolerance in tomato ( Solanum lycopersicum ) genotypes through GWAS and population genetics
    Article Snippet: The library pool was analyzed in Bioanalyzer 2100 (Agilent Technologies) using High Sensitivity (HS) DNA chip and then sequenced independently on Illumina platform to generate up to ~ 3 million reads/ sample.

    Article Title: The circadian clock CRY1 regulates pluripotent stem cell identity and somatic cell reprogramming.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Trichostatin A Sigma-Aldrich Cat# T8552 Protein Assay Dye Reagent Bio-Rad Laboratories Cat# 500-0006 Nitrocellulose Membrane, 0.45 um Bio-Rad Laboratories Cat# 1620115 Immobilon Western Chemiluminescent HRP substrate EMD Millipore Cat# WBKLS0500 TRIzol Invitrogen Cat# 15596026 Maxima H Minus Mastermix Thermo Scientific Cat# M1662 PowerUp SYBR Master Mix Applied Biosystems Cat# A25918 Protein G Sepharose Fast Flow Sigma-Aldrich Cat# P3296 Protein A Sepharose Fast Flow Sigma-Aldrich Cat# P9424 RNase A Sigma-Aldrich Cat# R6513 Proteinase A Sigma-Aldrich Cat# P8892 Oligomycin Sigma-Aldrich Cat# O4876 carbonyl cyanideptrifluoromethoxyphenylhydrazone (FCCP) Sigma-Aldrich Cat# C2920 rotenone Sigma-Aldrich Cat# R8875 SytoxBlue Invitrogen Cat# S34857 Critical Commercial Assays NEXTFLEX Rapid DNA-seq v2.0 Perkin Elmer Cat# NOVA-5188-03 24-well Seahorse XF-24 Assay Kit Agilent Cat# 100867-100 Chromium Next GEM Single Cell 30 GEM, Library & Gel Bead Kit v3.1, 16 rxns 10x Genomics Cat# 1000121 Chromium Next GEM Chip G Single Cell Kit, 48 rxns 10x Genomics Cat# 1000120 Qubit dsDNA HS Assay Kit Life Technologies Cat#: Q32851 high-sensitivity DNA chips Agilent Cat#: 50674626 KAPA Library Quantification Kit Kapa Biosystems Cat#: KK4824 Deposited Data CRY1 ChIP-seq data This paper GSE230321 scRNA-seq data This paper GSE230371 Experimental Models: Organisms/Strains Cry1/2 double knockout mice Vitaterna et al.120 N/A Immortalized MEFs Aguilar-Arnal et al.68 N/A Nanog-GFP primary MEFs Kamon et al.121 N/A Nanog-GFP PreiPSCs This paper N/A Nanog-GFP iPSCs This paper N/A ZHBTc4ESCs Niwa et al.122 N/A Cry1 KO ESCs This paper N/A PLAT-E Cell Biolabs Cat# RV-101 293 expressing LIF cells Hishida et al.123 N/A HEK293 cells Cardone et al.124 N/A Recombinant DNA Myc-Bmal1 Cardone et al.124 N/A Myc-Clock Cardone et al.124 N/A pMXs-Oct3/4 Takahashi et al.125 Addgene # 13366 pMXs-Sox2 Takahashi et al.125 Addgene # 13367 pMXs-Klf4 Takahashi et al.125 Addgene # 13370 (Continued on next page) Cell Reports 42, 112590, June 27, 2023 21

    Article Title: Metagenomic profiling for gut of indigenous poultry reared under free range system of management reveal prevalence of zoonotic pathogens in chicken, while predominating beneficial microbes in duck
    Article Snippet: Quantity and quality check (QC) of library on Bio-analyzer: The ampli ed libraries were analyzed in Bioanalyzer 2100 (Agilent Technologies) using High Sensitivity (HS) DNA chip (Pal, A.

    Article Title: Whole-Genome Sequence Insight into the Plant-Growth-Promoting Bacterium Priestia filamentosa Strain AZC66 Obtained from Zygophyllum coccineum Rhizosphere
    Article Snippet: According to the manufacturer’s instructions, the amplified library was analyzed on a Bioanalyzer 2100 (Agilent Technologies) using a High Sensitivity (HS) DNA chip.

    Article Title: CRISPR-Cas9 Editing Induces Loss of Heterozygosity in the Pathogenic Yeast Candida parapsilosis
    Article Snippet: Quality control of amplified libraries was performed using Bioanalyzer DNA high-sensitivity (HS) chip (Agilent Technologies).

    Article Title: Circulating cell-free DNA for target quantification in hematologic malignancies: Validation of a protocol to overcome pre-analytical biases.
    Article Snippet: Roberta Soscia | Irene Della Starza | Lucia Anna De Novi | Caterina Ilari | Michela Ansuinelli | Marzia Cavalli | Vittorio Bellomarino | Luciana Cafforio | Mariangela Di Trani | Giovanni Cazzaniga | Grazia Fazio | Alessandra Santoro | Domenico Salemi | Orietta Spinelli | Manuela Tosi | Carolina Terragna | Valentina Robustelli | Teresa Bellissimo | Gioia Colafigli | Massimo Breccia | Sabina Chiaretti | Alice Di Rocco | Maurizio Martelli | Anna Guarini | Ilaria Del Giudice | Robin Foà

    Article Title: Uncovering Alternate Splicing Events and Premature Stop Codons Associated with Early Sucrose Accumulation in Sugarcane Using BSR-seq
    Article Snippet: Identification of the source of genetic variation in the large and complex genome of sugarcane has been comparatively less explored through next-generation sequencing tools.. In this study, RNA-seq libraries of two extreme bulks from a segregating full-sib population and its parents were used to identify highly significant, alternate splicing (AS) events and premature stop codons (PMC) associated with early sucrose accumulation.. An important differential AS event was identified within the β-subunit of pyrophosphate-fructose 6-phosphate 1-phosphotransferase (PFP) which plays a key role in carbon partitioning in sugarcane.

    Expressing:

    Article Title: Mapping phenotypic performance and novel SNPs for cold tolerance in tomato ( Solanum lycopersicum ) genotypes through GWAS and population genetics
    Article Snippet: The library pool was analyzed in Bioanalyzer 2100 (Agilent Technologies) using High Sensitivity (HS) DNA chip and then sequenced independently on Illumina platform to generate up to ~ 3 million reads/ sample.

    Article Title: The circadian clock CRY1 regulates pluripotent stem cell identity and somatic cell reprogramming.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Trichostatin A Sigma-Aldrich Cat# T8552 Protein Assay Dye Reagent Bio-Rad Laboratories Cat# 500-0006 Nitrocellulose Membrane, 0.45 um Bio-Rad Laboratories Cat# 1620115 Immobilon Western Chemiluminescent HRP substrate EMD Millipore Cat# WBKLS0500 TRIzol Invitrogen Cat# 15596026 Maxima H Minus Mastermix Thermo Scientific Cat# M1662 PowerUp SYBR Master Mix Applied Biosystems Cat# A25918 Protein G Sepharose Fast Flow Sigma-Aldrich Cat# P3296 Protein A Sepharose Fast Flow Sigma-Aldrich Cat# P9424 RNase A Sigma-Aldrich Cat# R6513 Proteinase A Sigma-Aldrich Cat# P8892 Oligomycin Sigma-Aldrich Cat# O4876 carbonyl cyanideptrifluoromethoxyphenylhydrazone (FCCP) Sigma-Aldrich Cat# C2920 rotenone Sigma-Aldrich Cat# R8875 SytoxBlue Invitrogen Cat# S34857 Critical Commercial Assays NEXTFLEX Rapid DNA-seq v2.0 Perkin Elmer Cat# NOVA-5188-03 24-well Seahorse XF-24 Assay Kit Agilent Cat# 100867-100 Chromium Next GEM Single Cell 30 GEM, Library & Gel Bead Kit v3.1, 16 rxns 10x Genomics Cat# 1000121 Chromium Next GEM Chip G Single Cell Kit, 48 rxns 10x Genomics Cat# 1000120 Qubit dsDNA HS Assay Kit Life Technologies Cat#: Q32851 high-sensitivity DNA chips Agilent Cat#: 50674626 KAPA Library Quantification Kit Kapa Biosystems Cat#: KK4824 Deposited Data CRY1 ChIP-seq data This paper GSE230321 scRNA-seq data This paper GSE230371 Experimental Models: Organisms/Strains Cry1/2 double knockout mice Vitaterna et al.120 N/A Immortalized MEFs Aguilar-Arnal et al.68 N/A Nanog-GFP primary MEFs Kamon et al.121 N/A Nanog-GFP PreiPSCs This paper N/A Nanog-GFP iPSCs This paper N/A ZHBTc4ESCs Niwa et al.122 N/A Cry1 KO ESCs This paper N/A PLAT-E Cell Biolabs Cat# RV-101 293 expressing LIF cells Hishida et al.123 N/A HEK293 cells Cardone et al.124 N/A Recombinant DNA Myc-Bmal1 Cardone et al.124 N/A Myc-Clock Cardone et al.124 N/A pMXs-Oct3/4 Takahashi et al.125 Addgene # 13366 pMXs-Sox2 Takahashi et al.125 Addgene # 13367 pMXs-Klf4 Takahashi et al.125 Addgene # 13370 (Continued on next page) Cell Reports 42, 112590, June 27, 2023 21

    Article Title: Metagenomic profiling for gut of indigenous poultry reared under free range system of management reveal prevalence of zoonotic pathogens in chicken, while predominating beneficial microbes in duck
    Article Snippet: Quantity and quality check (QC) of library on Bio-analyzer: The ampli ed libraries were analyzed in Bioanalyzer 2100 (Agilent Technologies) using High Sensitivity (HS) DNA chip (Pal, A.

    Article Title: Whole-Genome Sequence Insight into the Plant-Growth-Promoting Bacterium Priestia filamentosa Strain AZC66 Obtained from Zygophyllum coccineum Rhizosphere
    Article Snippet: According to the manufacturer’s instructions, the amplified library was analyzed on a Bioanalyzer 2100 (Agilent Technologies) using a High Sensitivity (HS) DNA chip.

    Article Title: CRISPR-Cas9 Editing Induces Loss of Heterozygosity in the Pathogenic Yeast Candida parapsilosis
    Article Snippet: Quality control of amplified libraries was performed using Bioanalyzer DNA high-sensitivity (HS) chip (Agilent Technologies).

    Article Title: Circulating cell-free DNA for target quantification in hematologic malignancies: Validation of a protocol to overcome pre-analytical biases.
    Article Snippet: Roberta Soscia | Irene Della Starza | Lucia Anna De Novi | Caterina Ilari | Michela Ansuinelli | Marzia Cavalli | Vittorio Bellomarino | Luciana Cafforio | Mariangela Di Trani | Giovanni Cazzaniga | Grazia Fazio | Alessandra Santoro | Domenico Salemi | Orietta Spinelli | Manuela Tosi | Carolina Terragna | Valentina Robustelli | Teresa Bellissimo | Gioia Colafigli | Massimo Breccia | Sabina Chiaretti | Alice Di Rocco | Maurizio Martelli | Anna Guarini | Ilaria Del Giudice | Robin Foà

    Article Title: Uncovering Alternate Splicing Events and Premature Stop Codons Associated with Early Sucrose Accumulation in Sugarcane Using BSR-seq
    Article Snippet: Identification of the source of genetic variation in the large and complex genome of sugarcane has been comparatively less explored through next-generation sequencing tools.. In this study, RNA-seq libraries of two extreme bulks from a segregating full-sib population and its parents were used to identify highly significant, alternate splicing (AS) events and premature stop codons (PMC) associated with early sucrose accumulation.. An important differential AS event was identified within the β-subunit of pyrophosphate-fructose 6-phosphate 1-phosphotransferase (PFP) which plays a key role in carbon partitioning in sugarcane.

    Recombinant:

    Article Title: Mapping phenotypic performance and novel SNPs for cold tolerance in tomato ( Solanum lycopersicum ) genotypes through GWAS and population genetics
    Article Snippet: The library pool was analyzed in Bioanalyzer 2100 (Agilent Technologies) using High Sensitivity (HS) DNA chip and then sequenced independently on Illumina platform to generate up to ~ 3 million reads/ sample.

    Article Title: The circadian clock CRY1 regulates pluripotent stem cell identity and somatic cell reprogramming.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Trichostatin A Sigma-Aldrich Cat# T8552 Protein Assay Dye Reagent Bio-Rad Laboratories Cat# 500-0006 Nitrocellulose Membrane, 0.45 um Bio-Rad Laboratories Cat# 1620115 Immobilon Western Chemiluminescent HRP substrate EMD Millipore Cat# WBKLS0500 TRIzol Invitrogen Cat# 15596026 Maxima H Minus Mastermix Thermo Scientific Cat# M1662 PowerUp SYBR Master Mix Applied Biosystems Cat# A25918 Protein G Sepharose Fast Flow Sigma-Aldrich Cat# P3296 Protein A Sepharose Fast Flow Sigma-Aldrich Cat# P9424 RNase A Sigma-Aldrich Cat# R6513 Proteinase A Sigma-Aldrich Cat# P8892 Oligomycin Sigma-Aldrich Cat# O4876 carbonyl cyanideptrifluoromethoxyphenylhydrazone (FCCP) Sigma-Aldrich Cat# C2920 rotenone Sigma-Aldrich Cat# R8875 SytoxBlue Invitrogen Cat# S34857 Critical Commercial Assays NEXTFLEX Rapid DNA-seq v2.0 Perkin Elmer Cat# NOVA-5188-03 24-well Seahorse XF-24 Assay Kit Agilent Cat# 100867-100 Chromium Next GEM Single Cell 30 GEM, Library & Gel Bead Kit v3.1, 16 rxns 10x Genomics Cat# 1000121 Chromium Next GEM Chip G Single Cell Kit, 48 rxns 10x Genomics Cat# 1000120 Qubit dsDNA HS Assay Kit Life Technologies Cat#: Q32851 high-sensitivity DNA chips Agilent Cat#: 50674626 KAPA Library Quantification Kit Kapa Biosystems Cat#: KK4824 Deposited Data CRY1 ChIP-seq data This paper GSE230321 scRNA-seq data This paper GSE230371 Experimental Models: Organisms/Strains Cry1/2 double knockout mice Vitaterna et al.120 N/A Immortalized MEFs Aguilar-Arnal et al.68 N/A Nanog-GFP primary MEFs Kamon et al.121 N/A Nanog-GFP PreiPSCs This paper N/A Nanog-GFP iPSCs This paper N/A ZHBTc4ESCs Niwa et al.122 N/A Cry1 KO ESCs This paper N/A PLAT-E Cell Biolabs Cat# RV-101 293 expressing LIF cells Hishida et al.123 N/A HEK293 cells Cardone et al.124 N/A Recombinant DNA Myc-Bmal1 Cardone et al.124 N/A Myc-Clock Cardone et al.124 N/A pMXs-Oct3/4 Takahashi et al.125 Addgene # 13366 pMXs-Sox2 Takahashi et al.125 Addgene # 13367 pMXs-Klf4 Takahashi et al.125 Addgene # 13370 (Continued on next page) Cell Reports 42, 112590, June 27, 2023 21

    Article Title: Metagenomic profiling for gut of indigenous poultry reared under free range system of management reveal prevalence of zoonotic pathogens in chicken, while predominating beneficial microbes in duck
    Article Snippet: Quantity and quality check (QC) of library on Bio-analyzer: The ampli ed libraries were analyzed in Bioanalyzer 2100 (Agilent Technologies) using High Sensitivity (HS) DNA chip (Pal, A.

    Article Title: Whole-Genome Sequence Insight into the Plant-Growth-Promoting Bacterium Priestia filamentosa Strain AZC66 Obtained from Zygophyllum coccineum Rhizosphere
    Article Snippet: According to the manufacturer’s instructions, the amplified library was analyzed on a Bioanalyzer 2100 (Agilent Technologies) using a High Sensitivity (HS) DNA chip.

    Article Title: CRISPR-Cas9 Editing Induces Loss of Heterozygosity in the Pathogenic Yeast Candida parapsilosis
    Article Snippet: Quality control of amplified libraries was performed using Bioanalyzer DNA high-sensitivity (HS) chip (Agilent Technologies).

    Article Title: Circulating cell-free DNA for target quantification in hematologic malignancies: Validation of a protocol to overcome pre-analytical biases.
    Article Snippet: Roberta Soscia | Irene Della Starza | Lucia Anna De Novi | Caterina Ilari | Michela Ansuinelli | Marzia Cavalli | Vittorio Bellomarino | Luciana Cafforio | Mariangela Di Trani | Giovanni Cazzaniga | Grazia Fazio | Alessandra Santoro | Domenico Salemi | Orietta Spinelli | Manuela Tosi | Carolina Terragna | Valentina Robustelli | Teresa Bellissimo | Gioia Colafigli | Massimo Breccia | Sabina Chiaretti | Alice Di Rocco | Maurizio Martelli | Anna Guarini | Ilaria Del Giudice | Robin Foà

    Article Title: Uncovering Alternate Splicing Events and Premature Stop Codons Associated with Early Sucrose Accumulation in Sugarcane Using BSR-seq
    Article Snippet: Identification of the source of genetic variation in the large and complex genome of sugarcane has been comparatively less explored through next-generation sequencing tools.. In this study, RNA-seq libraries of two extreme bulks from a segregating full-sib population and its parents were used to identify highly significant, alternate splicing (AS) events and premature stop codons (PMC) associated with early sucrose accumulation.. An important differential AS event was identified within the β-subunit of pyrophosphate-fructose 6-phosphate 1-phosphotransferase (PFP) which plays a key role in carbon partitioning in sugarcane.

    Electrophoresis:

    Article Title: Mapping phenotypic performance and novel SNPs for cold tolerance in tomato ( Solanum lycopersicum ) genotypes through GWAS and population genetics
    Article Snippet: The library pool was analyzed in Bioanalyzer 2100 (Agilent Technologies) using High Sensitivity (HS) DNA chip and then sequenced independently on Illumina platform to generate up to ~ 3 million reads/ sample.

    Article Title: The circadian clock CRY1 regulates pluripotent stem cell identity and somatic cell reprogramming.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Trichostatin A Sigma-Aldrich Cat# T8552 Protein Assay Dye Reagent Bio-Rad Laboratories Cat# 500-0006 Nitrocellulose Membrane, 0.45 um Bio-Rad Laboratories Cat# 1620115 Immobilon Western Chemiluminescent HRP substrate EMD Millipore Cat# WBKLS0500 TRIzol Invitrogen Cat# 15596026 Maxima H Minus Mastermix Thermo Scientific Cat# M1662 PowerUp SYBR Master Mix Applied Biosystems Cat# A25918 Protein G Sepharose Fast Flow Sigma-Aldrich Cat# P3296 Protein A Sepharose Fast Flow Sigma-Aldrich Cat# P9424 RNase A Sigma-Aldrich Cat# R6513 Proteinase A Sigma-Aldrich Cat# P8892 Oligomycin Sigma-Aldrich Cat# O4876 carbonyl cyanideptrifluoromethoxyphenylhydrazone (FCCP) Sigma-Aldrich Cat# C2920 rotenone Sigma-Aldrich Cat# R8875 SytoxBlue Invitrogen Cat# S34857 Critical Commercial Assays NEXTFLEX Rapid DNA-seq v2.0 Perkin Elmer Cat# NOVA-5188-03 24-well Seahorse XF-24 Assay Kit Agilent Cat# 100867-100 Chromium Next GEM Single Cell 30 GEM, Library & Gel Bead Kit v3.1, 16 rxns 10x Genomics Cat# 1000121 Chromium Next GEM Chip G Single Cell Kit, 48 rxns 10x Genomics Cat# 1000120 Qubit dsDNA HS Assay Kit Life Technologies Cat#: Q32851 high-sensitivity DNA chips Agilent Cat#: 50674626 KAPA Library Quantification Kit Kapa Biosystems Cat#: KK4824 Deposited Data CRY1 ChIP-seq data This paper GSE230321 scRNA-seq data This paper GSE230371 Experimental Models: Organisms/Strains Cry1/2 double knockout mice Vitaterna et al.120 N/A Immortalized MEFs Aguilar-Arnal et al.68 N/A Nanog-GFP primary MEFs Kamon et al.121 N/A Nanog-GFP PreiPSCs This paper N/A Nanog-GFP iPSCs This paper N/A ZHBTc4ESCs Niwa et al.122 N/A Cry1 KO ESCs This paper N/A PLAT-E Cell Biolabs Cat# RV-101 293 expressing LIF cells Hishida et al.123 N/A HEK293 cells Cardone et al.124 N/A Recombinant DNA Myc-Bmal1 Cardone et al.124 N/A Myc-Clock Cardone et al.124 N/A pMXs-Oct3/4 Takahashi et al.125 Addgene # 13366 pMXs-Sox2 Takahashi et al.125 Addgene # 13367 pMXs-Klf4 Takahashi et al.125 Addgene # 13370 (Continued on next page) Cell Reports 42, 112590, June 27, 2023 21

    Article Title: Metagenomic profiling for gut of indigenous poultry reared under free range system of management reveal prevalence of zoonotic pathogens in chicken, while predominating beneficial microbes in duck
    Article Snippet: Quantity and quality check (QC) of library on Bio-analyzer: The ampli ed libraries were analyzed in Bioanalyzer 2100 (Agilent Technologies) using High Sensitivity (HS) DNA chip (Pal, A.

    Article Title: Whole-Genome Sequence Insight into the Plant-Growth-Promoting Bacterium Priestia filamentosa Strain AZC66 Obtained from Zygophyllum coccineum Rhizosphere
    Article Snippet: According to the manufacturer’s instructions, the amplified library was analyzed on a Bioanalyzer 2100 (Agilent Technologies) using a High Sensitivity (HS) DNA chip.

    Article Title: CRISPR-Cas9 Editing Induces Loss of Heterozygosity in the Pathogenic Yeast Candida parapsilosis
    Article Snippet: Quality control of amplified libraries was performed using Bioanalyzer DNA high-sensitivity (HS) chip (Agilent Technologies).

    Article Title: Circulating cell-free DNA for target quantification in hematologic malignancies: Validation of a protocol to overcome pre-analytical biases.
    Article Snippet: Roberta Soscia | Irene Della Starza | Lucia Anna De Novi | Caterina Ilari | Michela Ansuinelli | Marzia Cavalli | Vittorio Bellomarino | Luciana Cafforio | Mariangela Di Trani | Giovanni Cazzaniga | Grazia Fazio | Alessandra Santoro | Domenico Salemi | Orietta Spinelli | Manuela Tosi | Carolina Terragna | Valentina Robustelli | Teresa Bellissimo | Gioia Colafigli | Massimo Breccia | Sabina Chiaretti | Alice Di Rocco | Maurizio Martelli | Anna Guarini | Ilaria Del Giudice | Robin Foà

    Article Title: Uncovering Alternate Splicing Events and Premature Stop Codons Associated with Early Sucrose Accumulation in Sugarcane Using BSR-seq
    Article Snippet: Identification of the source of genetic variation in the large and complex genome of sugarcane has been comparatively less explored through next-generation sequencing tools.. In this study, RNA-seq libraries of two extreme bulks from a segregating full-sib population and its parents were used to identify highly significant, alternate splicing (AS) events and premature stop codons (PMC) associated with early sucrose accumulation.. An important differential AS event was identified within the β-subunit of pyrophosphate-fructose 6-phosphate 1-phosphotransferase (PFP) which plays a key role in carbon partitioning in sugarcane.

    Software:

    Article Title: Mapping phenotypic performance and novel SNPs for cold tolerance in tomato ( Solanum lycopersicum ) genotypes through GWAS and population genetics
    Article Snippet: The library pool was analyzed in Bioanalyzer 2100 (Agilent Technologies) using High Sensitivity (HS) DNA chip and then sequenced independently on Illumina platform to generate up to ~ 3 million reads/ sample.

    Article Title: The circadian clock CRY1 regulates pluripotent stem cell identity and somatic cell reprogramming.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Trichostatin A Sigma-Aldrich Cat# T8552 Protein Assay Dye Reagent Bio-Rad Laboratories Cat# 500-0006 Nitrocellulose Membrane, 0.45 um Bio-Rad Laboratories Cat# 1620115 Immobilon Western Chemiluminescent HRP substrate EMD Millipore Cat# WBKLS0500 TRIzol Invitrogen Cat# 15596026 Maxima H Minus Mastermix Thermo Scientific Cat# M1662 PowerUp SYBR Master Mix Applied Biosystems Cat# A25918 Protein G Sepharose Fast Flow Sigma-Aldrich Cat# P3296 Protein A Sepharose Fast Flow Sigma-Aldrich Cat# P9424 RNase A Sigma-Aldrich Cat# R6513 Proteinase A Sigma-Aldrich Cat# P8892 Oligomycin Sigma-Aldrich Cat# O4876 carbonyl cyanideptrifluoromethoxyphenylhydrazone (FCCP) Sigma-Aldrich Cat# C2920 rotenone Sigma-Aldrich Cat# R8875 SytoxBlue Invitrogen Cat# S34857 Critical Commercial Assays NEXTFLEX Rapid DNA-seq v2.0 Perkin Elmer Cat# NOVA-5188-03 24-well Seahorse XF-24 Assay Kit Agilent Cat# 100867-100 Chromium Next GEM Single Cell 30 GEM, Library & Gel Bead Kit v3.1, 16 rxns 10x Genomics Cat# 1000121 Chromium Next GEM Chip G Single Cell Kit, 48 rxns 10x Genomics Cat# 1000120 Qubit dsDNA HS Assay Kit Life Technologies Cat#: Q32851 high-sensitivity DNA chips Agilent Cat#: 50674626 KAPA Library Quantification Kit Kapa Biosystems Cat#: KK4824 Deposited Data CRY1 ChIP-seq data This paper GSE230321 scRNA-seq data This paper GSE230371 Experimental Models: Organisms/Strains Cry1/2 double knockout mice Vitaterna et al.120 N/A Immortalized MEFs Aguilar-Arnal et al.68 N/A Nanog-GFP primary MEFs Kamon et al.121 N/A Nanog-GFP PreiPSCs This paper N/A Nanog-GFP iPSCs This paper N/A ZHBTc4ESCs Niwa et al.122 N/A Cry1 KO ESCs This paper N/A PLAT-E Cell Biolabs Cat# RV-101 293 expressing LIF cells Hishida et al.123 N/A HEK293 cells Cardone et al.124 N/A Recombinant DNA Myc-Bmal1 Cardone et al.124 N/A Myc-Clock Cardone et al.124 N/A pMXs-Oct3/4 Takahashi et al.125 Addgene # 13366 pMXs-Sox2 Takahashi et al.125 Addgene # 13367 pMXs-Klf4 Takahashi et al.125 Addgene # 13370 (Continued on next page) Cell Reports 42, 112590, June 27, 2023 21

    Article Title: Metagenomic profiling for gut of indigenous poultry reared under free range system of management reveal prevalence of zoonotic pathogens in chicken, while predominating beneficial microbes in duck
    Article Snippet: Quantity and quality check (QC) of library on Bio-analyzer: The ampli ed libraries were analyzed in Bioanalyzer 2100 (Agilent Technologies) using High Sensitivity (HS) DNA chip (Pal, A.

    Article Title: Whole-Genome Sequence Insight into the Plant-Growth-Promoting Bacterium Priestia filamentosa Strain AZC66 Obtained from Zygophyllum coccineum Rhizosphere
    Article Snippet: According to the manufacturer’s instructions, the amplified library was analyzed on a Bioanalyzer 2100 (Agilent Technologies) using a High Sensitivity (HS) DNA chip.

    Article Title: CRISPR-Cas9 Editing Induces Loss of Heterozygosity in the Pathogenic Yeast Candida parapsilosis
    Article Snippet: Quality control of amplified libraries was performed using Bioanalyzer DNA high-sensitivity (HS) chip (Agilent Technologies).

    Article Title: Circulating cell-free DNA for target quantification in hematologic malignancies: Validation of a protocol to overcome pre-analytical biases.
    Article Snippet: Roberta Soscia | Irene Della Starza | Lucia Anna De Novi | Caterina Ilari | Michela Ansuinelli | Marzia Cavalli | Vittorio Bellomarino | Luciana Cafforio | Mariangela Di Trani | Giovanni Cazzaniga | Grazia Fazio | Alessandra Santoro | Domenico Salemi | Orietta Spinelli | Manuela Tosi | Carolina Terragna | Valentina Robustelli | Teresa Bellissimo | Gioia Colafigli | Massimo Breccia | Sabina Chiaretti | Alice Di Rocco | Maurizio Martelli | Anna Guarini | Ilaria Del Giudice | Robin Foà

    Article Title: Uncovering Alternate Splicing Events and Premature Stop Codons Associated with Early Sucrose Accumulation in Sugarcane Using BSR-seq
    Article Snippet: Identification of the source of genetic variation in the large and complex genome of sugarcane has been comparatively less explored through next-generation sequencing tools.. In this study, RNA-seq libraries of two extreme bulks from a segregating full-sib population and its parents were used to identify highly significant, alternate splicing (AS) events and premature stop codons (PMC) associated with early sucrose accumulation.. An important differential AS event was identified within the β-subunit of pyrophosphate-fructose 6-phosphate 1-phosphotransferase (PFP) which plays a key role in carbon partitioning in sugarcane.

    MicroChIP Assay:

    Article Title: Mapping phenotypic performance and novel SNPs for cold tolerance in tomato ( Solanum lycopersicum ) genotypes through GWAS and population genetics
    Article Snippet: The library pool was analyzed in Bioanalyzer 2100 (Agilent Technologies) using High Sensitivity (HS) DNA chip and then sequenced independently on Illumina platform to generate up to ~ 3 million reads/ sample.

    Article Title: The circadian clock CRY1 regulates pluripotent stem cell identity and somatic cell reprogramming.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Trichostatin A Sigma-Aldrich Cat# T8552 Protein Assay Dye Reagent Bio-Rad Laboratories Cat# 500-0006 Nitrocellulose Membrane, 0.45 um Bio-Rad Laboratories Cat# 1620115 Immobilon Western Chemiluminescent HRP substrate EMD Millipore Cat# WBKLS0500 TRIzol Invitrogen Cat# 15596026 Maxima H Minus Mastermix Thermo Scientific Cat# M1662 PowerUp SYBR Master Mix Applied Biosystems Cat# A25918 Protein G Sepharose Fast Flow Sigma-Aldrich Cat# P3296 Protein A Sepharose Fast Flow Sigma-Aldrich Cat# P9424 RNase A Sigma-Aldrich Cat# R6513 Proteinase A Sigma-Aldrich Cat# P8892 Oligomycin Sigma-Aldrich Cat# O4876 carbonyl cyanideptrifluoromethoxyphenylhydrazone (FCCP) Sigma-Aldrich Cat# C2920 rotenone Sigma-Aldrich Cat# R8875 SytoxBlue Invitrogen Cat# S34857 Critical Commercial Assays NEXTFLEX Rapid DNA-seq v2.0 Perkin Elmer Cat# NOVA-5188-03 24-well Seahorse XF-24 Assay Kit Agilent Cat# 100867-100 Chromium Next GEM Single Cell 30 GEM, Library & Gel Bead Kit v3.1, 16 rxns 10x Genomics Cat# 1000121 Chromium Next GEM Chip G Single Cell Kit, 48 rxns 10x Genomics Cat# 1000120 Qubit dsDNA HS Assay Kit Life Technologies Cat#: Q32851 high-sensitivity DNA chips Agilent Cat#: 50674626 KAPA Library Quantification Kit Kapa Biosystems Cat#: KK4824 Deposited Data CRY1 ChIP-seq data This paper GSE230321 scRNA-seq data This paper GSE230371 Experimental Models: Organisms/Strains Cry1/2 double knockout mice Vitaterna et al.120 N/A Immortalized MEFs Aguilar-Arnal et al.68 N/A Nanog-GFP primary MEFs Kamon et al.121 N/A Nanog-GFP PreiPSCs This paper N/A Nanog-GFP iPSCs This paper N/A ZHBTc4ESCs Niwa et al.122 N/A Cry1 KO ESCs This paper N/A PLAT-E Cell Biolabs Cat# RV-101 293 expressing LIF cells Hishida et al.123 N/A HEK293 cells Cardone et al.124 N/A Recombinant DNA Myc-Bmal1 Cardone et al.124 N/A Myc-Clock Cardone et al.124 N/A pMXs-Oct3/4 Takahashi et al.125 Addgene # 13366 pMXs-Sox2 Takahashi et al.125 Addgene # 13367 pMXs-Klf4 Takahashi et al.125 Addgene # 13370 (Continued on next page) Cell Reports 42, 112590, June 27, 2023 21

    Article Title: Metagenomic profiling for gut of indigenous poultry reared under free range system of management reveal prevalence of zoonotic pathogens in chicken, while predominating beneficial microbes in duck
    Article Snippet: Quantity and quality check (QC) of library on Bio-analyzer: The ampli ed libraries were analyzed in Bioanalyzer 2100 (Agilent Technologies) using High Sensitivity (HS) DNA chip (Pal, A.

    Article Title: Whole-Genome Sequence Insight into the Plant-Growth-Promoting Bacterium Priestia filamentosa Strain AZC66 Obtained from Zygophyllum coccineum Rhizosphere
    Article Snippet: According to the manufacturer’s instructions, the amplified library was analyzed on a Bioanalyzer 2100 (Agilent Technologies) using a High Sensitivity (HS) DNA chip.

    Article Title: CRISPR-Cas9 Editing Induces Loss of Heterozygosity in the Pathogenic Yeast Candida parapsilosis
    Article Snippet: Quality control of amplified libraries was performed using Bioanalyzer DNA high-sensitivity (HS) chip (Agilent Technologies).

    Article Title: Circulating cell-free DNA for target quantification in hematologic malignancies: Validation of a protocol to overcome pre-analytical biases.
    Article Snippet: Roberta Soscia | Irene Della Starza | Lucia Anna De Novi | Caterina Ilari | Michela Ansuinelli | Marzia Cavalli | Vittorio Bellomarino | Luciana Cafforio | Mariangela Di Trani | Giovanni Cazzaniga | Grazia Fazio | Alessandra Santoro | Domenico Salemi | Orietta Spinelli | Manuela Tosi | Carolina Terragna | Valentina Robustelli | Teresa Bellissimo | Gioia Colafigli | Massimo Breccia | Sabina Chiaretti | Alice Di Rocco | Maurizio Martelli | Anna Guarini | Ilaria Del Giudice | Robin Foà

    Article Title: Uncovering Alternate Splicing Events and Premature Stop Codons Associated with Early Sucrose Accumulation in Sugarcane Using BSR-seq
    Article Snippet: Identification of the source of genetic variation in the large and complex genome of sugarcane has been comparatively less explored through next-generation sequencing tools.. In this study, RNA-seq libraries of two extreme bulks from a segregating full-sib population and its parents were used to identify highly significant, alternate splicing (AS) events and premature stop codons (PMC) associated with early sucrose accumulation.. An important differential AS event was identified within the β-subunit of pyrophosphate-fructose 6-phosphate 1-phosphotransferase (PFP) which plays a key role in carbon partitioning in sugarcane.



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